The comments in cfg files cannot be removed from the value strings. Normally, it doesn't matter. But for string parameters like "InputFile", the comment after the parameter will be treated as a part of the parameter. A possible solution may be the following revision in bool TAppOption::setValue( const char *option , char *value )

for( int i = 0 ; i < option_counter ; i++ ){

if( strcmp( options[i], option ) == 0 ){

lines for bug fixing
char * pComment = strchr( value , comment );
if( pComment != NULL )

*pComment = 0;

value = chomp( value );
lines for bug fixing

values[ optionindex[i] ] = (char*) malloc((strlen(value)+1)*sizeof(char));
strcpy( values[ optionindex[i] ], value );

return true;

}

}